Online Software Tools - Sequence analysis. Online Tool. Description> Also see Primer Design Tools. Ami. Gene. Annotation of Microbial Genes for for automatically identifying the most likely Co. Ding Sequences (CDSs). BLAST Search of Nucleotide, Protein and Genome Databases. Compare your query sequence to the working draft sequence of the human genome or its m. ![]() ยท Abstract. The sensitivity of the commonly used progressive multiple sequence alignment method has been greatly improved for the alignment of divergent. Free online software tools and information resources for molecular cloning. RNA and protein products. Biology Work. Bench. Protein tools: structure prediction, blast, multiple sequence alignment, randomize sequence. Nucleic tools: Primer design. Con. Seq Server. Server for the identification of functionally and structurally important residues in protein sequences. Count codon. Codon usage analysis. Countcodon. Generates a codon usage table for the input sequence. Cpgreport. Identify and report Cp. G islands in nucleotide sequences. EMBOSS Seqret. Sequence format conversion. Reformatting sequences, producing the reverse complement of a sequence, extracting fragments of a sequence, sequence case conversion or any combination of the above functions. FMAPSequence alignment with genome. Maps sequence to human, rat and mouse genomes. Gene. Mark. Gene Prediction in Bacteria, Archaea and Metagenomes. Genscan. Predicting the locations and exon- intron structures of genes in genomic sequences from a variety of organisms. NEBcutter. Examines DNA sequence to find large, non- overlapping open reading frames (ORFs) and sites for all restriction enzymes that cut the sequence just once. ORF Finder. ORF Finder (Open Reading Frame Finder). PROMALS3. DAlignments for multiple protein sequences or structures using information from sequence database searches, secondary structure prediction, available homologs with 3. D structures. Pictogram. Tool to visualize sequence alignments and consensus sequences showing the relative frequencies of the bases at each position. Plas. Mapper. Generates and annotates plasmid maps using only plasmid DNA sequence as input. Figures may be rendered in PNG, JPG, SVG or SVGZ format. Promo. Ser. Web- based service for extraction of a large number of promoter sequences from mammalian genomes. RNA/DNA secondary structure prediction and design. Pair. Fold predicts the minimum free energy secondary structure formed by two input DNA or RNA molecules. Restriction Map Generator. Analyzes a DNA sequence to identify Restriction Enzyme Sites and generate a comprehensive map overview of their locations within the DNA sequence. Restriction Mapper. Maps sites for restriction enzymes (restriction endonucleases) in DNA sequences. SOAP Short Oligonucleotide Analysis. Program for faster alignment of short oligonucleotides onto reference sequences for next generation sequencing data analysis. Sequence Manipulation Suite. Java. Script programs for generating, formatting, and analyzing short DNA and protein sequences. Superlink. Genetic linkage analysis with input- output relationships similar to those in standard genetic linkage programs. TRACTSA program to map oligopurine. DNA tracts. Trait- o- matic. Open- source tool to find and classify phenotypic correlations for variations in whole genomes. UGENEBioinformatics software. VIROMEClassification of predicted open- reading frames (ORFs) from viral metagenomes. Vista. Programs and databases for comparative analysis of genomic sequences. WEGOWeb Gene Ontology Annotation Plot. Web. ACTOnline visualisation of comparisons between up to five prokaryotic genome sequences, using Artemis Comparison Tool (ACT). Automatic production of DNA double helix with sequence input.
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